Re: [Freesurfer] Special image protocol

hard to say without seeing all the parameters (which look like they were cropped out). It does seem correct. If you acquire one and send it to me I'll take a look. Probably best to send it directly to me, not on list though cheers Bruce On Thu, 28 Mar 2019, Mustafa Amin wrote: >

Re: [Freesurfer] Special image protocol

External Email - Use Caution Hi Bruce, The MRI operator gave me this picture she needs to know whether we are on the right track. Is this the correct protocol? Thank you in advance. Yours faithfully, Mustafa M. Amin Department of Psychiatry Faculty of Medicine University of

Re: [Freesurfer] Special image protocol

External Email - Use Caution Thank you Bruce I will tell them Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 20.49, Bruce Fischl wrote: > > I see. Then they will have

Re: [Freesurfer] Special image protocol

External Email - Use Caution Many thanks Bruce Cheers! Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 20.48, Bruce Fischl wrote: > > no, it does not need contrast

Re: [Freesurfer] Special image protocol

External Email - Use Caution Thank you very much Matt Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 18.19, Glasser, Matthew wrote: > >External Email - Use

Re: [Freesurfer] Special image protocol

I see. Then they will have mprage sequences and you should be set On Wed, 27 Mar 2019, mustafa amin wrote: >External Email - Use Caution > > I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance. > > Mustafa M. Amin > Consultant Psychiatrist in Biological

Re: [Freesurfer] Special image protocol

no, it does not need contrast (in fact contrast would make it more difficult for FreeSurfer to process the data) cheers Bruce On Wed, 27 Mar 2019, mustafa amin wrote: >External Email - Use Caution > > Hi Bruce, > > I mentioned and showed the MP-RAGE protocol along with 3D

Re: [Freesurfer] Special image protocol

External Email - Use Caution No you do not need IV contrast for running FreeSurfer. Rather it would be better if that was not done. Matt. On 3/27/19, 12:05 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of mustafa amin" wrote: >External Email - Use Caution > >I

Re: [Freesurfer] Special image protocol

External Email - Use Caution I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance. Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 26 Mar 2019, at 21.24, Bruce

Re: [Freesurfer] Special image protocol

External Email - Use Caution Thank you Douglas. I have showed it to the radiologist and the operator. They said it needs contrast that will be injected to the patients. Is it true? Please confirm. Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist

Re: [Freesurfer] Special image protocol

If you're scanner is on this list, then use the given protocol http://adni.loni.usc.edu/methods/documents/mri-protocols/ On 3/26/19 1:56 AM, mustafa amin wrote: > External Email - Use Caution > > Dear Douglas, > > I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however

Re: [Freesurfer] Special image protocol

Hi Mustafa what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and

Re: [Freesurfer] Special image protocol

External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia.

Re: [Freesurfer] Special image protocol

External Email - Use Caution Hi Bruce, The MRI machine is from Phillips with 1.5 Tesla. How about the slice? Do I need to prepare sagittal, coronal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of

Re: [Freesurfer] Special image protocol

External Email - Use Caution Thank you for the information Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly

Re: [Freesurfer] Special image protocol

External Email - Use Caution Hi Bruce Thank you for letting me know about this, I’ll contact Andre if I need further explanation. Cheers Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara >

Re: [Freesurfer] Special image protocol

I highly recommend the multiecho mprage at about 1mm. On 2/21/19 10:30 AM, Bruce Fischl wrote: > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If

Re: [Freesurfer] Special image protocol

Hi Mustafa FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something cheers Bruce On

[Freesurfer] Special image protocol

External Email - Use Caution Dear member, I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.