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For clarification of the problem, here is the volumetry results from two
methods. Thanks.
*Using recon-all -all* *Using recon-all -motioncor -nuintensitycor
-talairach -normalization -skullstrip -gcareg -canorm -careg -rmneck
-skull-lta -calabel, then
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Thanks for pointing that out. The step numbers are those from section 5 in
https://secure-web.cisco.com/1MvjYJiIaIHWh8caycAJQMG2vD_09oIjJWD1kFpdpLGaLJqKUqv6siDUfatz8I9fZHcEbD5srsIxxiiVUpuAOzYLar0k7ybBjxcILafPvtIOZQBLhepP2-e7M1gXLLaFz7Bz1uYH_2RNmKyJQkjr3
There is not enough information to understand what you did in #2
On 8/30/2022 3:56 PM, Ruifeng Dong wrote:
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Hi all,
I am computing volumetry using freesurfer using two different runs.
1. I just use recon-all -all, and then look at the aseg.stats file.
2.
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Hi all,
I am computing volumetry using freesurfer using two different runs.
1. I just use recon-all -all, and then look at the aseg.stats file.
2. I ran recon-all only to the 12th step where gca labeling is done. It
doesn't generate the aseg.mgz file
