Re: [Freesurfer] Stuck on “CORRECTING DEFECT”

2016-06-27 Thread Dan Loewenherz
Hi Bruce, Thanks for the tips. I tried playing around with the files for a bit but didn’t make much progress. Here’s a link to the full tar/gz’ed subject dir: http://gate.nmr.mgh.harvard.edu/filedrop2/?p=4ej948sa49s Thanks! Dan On Fri Jun 24 22:22:17 EDT 2016, Bruce Fischl wrote: > Hi Dan > >

Re: [Freesurfer] Stuck on “CORRECTING DEFECT”

2016-06-24 Thread Bruce Fischl
Hi Dan that defect is too big, there must be something wrong. Check to see if the surface is connected to dura or across the hemis or something. You can look at the lh.inflated.nofix and/or the lh.orig.nofix to see where the defects are. Then you'll need to correct something once you've figure

[Freesurfer] Stuck on “CORRECTING DEFECT”

2016-06-24 Thread Dan Loewenherz
Hi freeserver folks, First time poster here. First off, thanks so much to the folks who work on and make this software available to the public. It seems like pretty incredible tech, from what little I understand of it. :) My problem is that the freesurfer process appears to be stuck on the recon-