editing: recon-all exited with errors
Hi Eli, the -make all flag contains a bug in the 6.0 release. This can be fixed
if you download this script -
https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.edu_pub_dist_freesurfer_dev-5Fbinaries_centos6-5Fx86-5F64_recon
Hi Eli, the -make all flag contains a bug in the 6.0 release. This can be fixed
if you download this script -
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev_binaries/centos6_x86_64/recon-all.makefile
- and overwrite the current $FREESURFER_HOME/bin/recon-all.makefile
Let me know if yo
, 2018 2:14:18 PM
To: Freesurfer support list
Cc: Rockers, Elijah D.
Subject: Re: [Freesurfer] Surface editing: recon-all exited with errors
h, maybe -make all has changed (or my memory of what it does is
incorrect). I'll find someone else here to help you out
cheers
Bruce
On Tue, 31 Jul 2018,
Bruce
h, maybe -make all has changed (or my memory of what it does is
incorrect). I'll find someone else here to help you out
cheers
Bruce
On Tue, 31 Jul 2018,
Bruce Fischl wrote:
did you run
recon-all -s -make all
?
I don't see it in the log
On Tue, 31 Jul 2018, Rockers, Elijah D. wrote:
did you run
recon-all -s -make all
?
I don't see it in the log
On Tue, 31 Jul 2018, Rockers, Elijah
D. wrote:
External Email - Use Caution
Oh, yep, sorry about that. I copy the list on this e-mail, and attach the log.
I think the list
blocks attachments, but if anyone w
Hi Eli
yes, please send the recon-all.log
thanks
Bruce
On Mon, 30 Jul 2018, Rockers, Elijah D.
wrote:
External Email - Use Caution
Hello.
I manually edited the brainmask.mgz file for three subjects. This was done to
prevent the pial
surface from extending into non-cortic
External Email - Use Caution
Hello.
I manually edited the brainmask.mgz file for three subjects. This was done to
prevent the pial surface from extending into non-cortical areas, in particular
the soft-tissue near the brain stem, and some cerebellar areas. Usually this
type of
