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> *From:* Yendiki, Anastasia
> *Sent:* Saturday, June 4, 2022 1:05 AM
> *To:* Salar Dini, Elaheh ; Freesurfer support
> list
> *Subject:* Re: TRACULA -bedp parallel processing
>
> What kind of cluster are you running the parallel processes on?
>
> ---
uster are you running the parallel processes on?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Friday, June 3, 2022 7:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data/TRACULA/subjects_dir/
mr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Friday, June 3, 2022 7:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get t
of Salar Dini, Elaheh
Sent: Wednesday, June 8, 2022 12:32 PM
To: Yendiki, Anastasia ; Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
That actually helps but not solving all the problems. So, what happens is that
if I
-bedp parallel processing
What kind of cluster are you running the parallel processes on?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Friday, June 3, 2022 7:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] T
bject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data/TRACULA/subjects_dir/57/dmri.bedpostX' is
not a d
rfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data/TRACULA/subjects_dir/57/d
: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data/TRACULA/subjects_dir/57/dmri.bedpostX' is
not a directory
, 2022 7:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data
What kind of cluster are you running the parallel processes on?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Friday, June 3, 2022 7:44 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA -bedp parallel
External Email - Use Caution
Thank you for the guidance.
When it tries to run pre.ParallelI , I'll get this:
Copying files to bedpost directory
cp: target '/home2/am2359/fs6_data/TRACULA/subjects_dir/57/dmri.bedpostX' is
not a directory
on behalf of Salar Dini, Elaheh
Sent: Friday, June 3, 2022 3:09 PM
To: Freesurfer support list
Subject: [Freesurfer] TRACULA -bedp parallel processing
External Email - Use Caution
Hello,
I have tried to create a text file with command lines that can be run in
parallel by using trac
External Email - Use Caution
Hello,
I have tried to create a text file with command lines that can be run in
parallel by using trac-all -bedp -c -jobs Parallel.
When I use this command three text files are produced named: pre.Parallel,
post.Parallel, and Parallel. Should I
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