Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread Douglas N Greve
ou please clarify which is used, and if these differences can be ignored? > > Thanks and best wishes, > Colm. > > > -Original Message- > From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] > Sent: 11 March 2014 00:39 > To: McGinnity, Colm > Cc: free

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread McGinnity, Colm
gt;> ignored? >> >> Thanks and best wishes, >> Colm. >> >> >> -Original Message- >> From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] >> Sent: 11 March 2014 00:39 >> To: McGinnity, Colm >> Cc: freesurfer@nmr.mgh.harv

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread Anastasia Yendiki
rd.edu Subject: Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0 Hi Colm - Note that the information in the tutorial (particularly the part where gradient tables can be formatted in 3 rows or 3 columns) pertains to the latest tracula update: http://surfer.nmr.mgh.harvard.edu/fswik

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-05-16 Thread McGinnity, Colm
ease clarify which is used, and if these differences can be ignored? Thanks and best wishes, Colm. -Original Message- From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] Sent: 11 March 2014 00:39 To: McGinnity, Colm Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TRACULA pr

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-18 Thread Anastasia Yendiki
gh.harvard.edu] Sent: 11 March 2014 00:39 To: McGinnity, Colm Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0 Hi Colm - Note that the information in the tutorial (particularly the part where gradient tables can be formatted in 3 rows or 3

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-18 Thread McGinnity, Colm
nnity King's College London -Original Message- From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] Sent: 11 March 2014 00:39 To: McGinnity, Colm Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0 Hi Colm - Not

Re: [Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-10 Thread Anastasia Yendiki
Hi Colm - Note that the information in the tutorial (particularly the part where gradient tables can be formatted in 3 rows or 3 columns) pertains to the latest tracula update: http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula#Updates You're using an older version that only supports th

[Freesurfer] TRACULA preprocessing error, FreeSurfer 5.2.0

2014-03-10 Thread McGinnity, Colm
Dear Experts, I am very new to TRACULA, I apologise for what is probably a silly question. I've got the following error on running trac-all -prep (FreeSurfer 5.2.0): awk: cmd. line:1: fatal: cannot open file `0' for reading (No such file or directory) mri_concat --i /home/k1193186/FreeSurfer/T