o: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Talairach error
>
> It is failing the tal registration check. Does the registration look ok?
> If so, then run with -no-talcheck.
>
>
> On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote:
>> Hello FreeSurfer exp
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Thursday, August 10, 2017 1:18 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Talairach error
It is failing the tal registration check. Does the registration look ok?
If so, then run
It is failing the tal registration check. Does the registration look ok?
If so, then run with -no-talcheck.
On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote:
> Hello FreeSurfer experts,
>
> I have been running into a consistent problem of Talairach alignment
> error in my recon-all for some of m
Dear Freesurfer experts,
I'm using freesurfer to process my monkey brain data. It reported errors during
Talairach registration step. So I added no-tal-check tag to run recon-all
autorecon1 and used tkregister2 to manually edit registration. However, I
couldn't let them perfectly fitted, espec
y Windows Phone
From: Bruce Fischl<mailto:fis...@nmr.mgh.harvard.edu>
Sent: 8/18/2013 10:08 PM
To: West, John D.<mailto:jdw...@iupui.edu>
Cc: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Talairach error - Talair
Hi John
can you send the entire recon-all.log? Any indication why the
talairach.xfm was not created?
cheers
Bruce
On Sun, 18 Aug 2013, West, John D. wrote:
> Hello.
>
> We are trying to run freesurfer on a Super Computing system here at IU.
> Unfortunately, we keep running into the following
Hello.
We are trying to run freesurfer on a Super Computing system here at IU.
Unfortunately, we keep running into the following error:
#
#@# Talairach Failure Detection Sun Aug 18 14:17:32 EDT 2013
/N/dc/projects/shenlab/subjects/10025_5/mri
talai
can you visually inspect the talairach xform in tkmedit and see if it
looks correct (or tkregister2)? What format were the images you gave to
recon-all? If analyze, make sure that the orientation is correct
cheers
Bruce
On Fri, 19 Aug 2011, Ahmed, F, Me
wrote:
Hello Freesurfers,
I got
Hello Freesurfers,
I got this error on my processing and wondered what the problem may be:
Talairach Failure Detection Mon Aug 15 16:26:35 SAST 2011
/mnt/hgfs/VBM/freesurfer_EONCS/EONCS/NN117/mri
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: tr
Hi Avi,
do you have any advise for Dana?
thanks
Bruce
On Tue, 30 Jun 2009, Dana W. Moore wrote:
Doug
Yes, there is an error message in the talairach_avi.log--I am not sure what
it means. The end of the log gives me this message:
Dana
imgrege: no voxels in register
ERROR: 'imgreg_4dfp /u
Doug
Yes, there is an error message in the talairach_avi.log--I am not
sure what it means. The end of the log gives me this message:
Dana
imgrege: no voxels in register
ERROR: 'imgreg_4dfp
/usr/local/freesurfer/average/711-2C_as_mni_average_305
/usr/local/freesurfer/average/711-2B_as_mni_av
The error msg asks you to look at transforms/talairach_avi.log. Have you
and does it reveal anything?
doug
Dana W. Moore wrote:
Hi all,
I get the following error message during recon-all:
ERROR: 'imgreg_4dfp
/usr/local/freesurfer/average/711-2C_as_mni_average_305
/usr/local/freesurfer/aver
Hi all,
I get the following error message during recon-all:
ERROR: 'imgreg_4dfp
/usr/local/freesurfer/average/711-2C_as_mni_average_305
/usr/local/freesurfer/average/711-2B_as_mni_average_305_mask
talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283'
failed! status=254
ERROR: m
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