Re: [Freesurfer] Thickness values to a common space

2014-04-15 Thread Douglas N Greve
Can you send the exact command line you are using (no wildcards or substitutions) and the terminal output that you get? On 04/15/2014 11:52 AM, sabin khadka wrote: > Hi Doug, > Thanks for the reply. > Those are the two steps I followed to extract vertexwise surface area, > thickness and pial_lg

Re: [Freesurfer] Thickness values to a common space

2014-04-15 Thread sabin khadka
Hi Doug, Thanks for the reply. Those are the two steps I followed to extract vertexwise surface area, thickness and pial_lgi values Step 1: mri_surf2surf --hemi ?h --srcsubject SUB001 [thickness, area or pial_lgi] --src_type curv --trgsubject fsaverage --trgsurfval SUB001-area --trg_type curv

Re: [Freesurfer] Thickness values to a common space

2014-04-15 Thread Douglas N Greve
what is your command line? The one below is not a valid command line. On 04/15/2014 11:23 AM, sabin khadka wrote: > Hi all, > > Related question to this. > I am trying to extract vertexwise surface area values in an ascii > files. For that I am doing > > mri_surf2surf --hemi ?h --srcsubject area

Re: [Freesurfer] Thickness values to a common space

2014-04-15 Thread sabin khadka
Hi all, Related question to this. I am trying to extract vertexwise surface area values in an ascii files. For that I am doing mri_surf2surf --hemi ?h --srcsubject area --src_type curv --trgsubject fsaverage --trgsurfval XYZ-area --trg_type curv mris_convert -c XYZ-area ?h.white XYZ-area.asc

[Freesurfer] Thickness values to a common space

2014-04-11 Thread Jonathan Holt
I’m trying to find a way to extract thickness values at each vertex for a given subject, and as a part of that process I need to ensure that each subject has been mapped to a common area, such that their vertices have a direct correspondence, but I’m not entirely sure how to go about it. I’ve