Subject: Re: [Freesurfer] trac-all -prep -c ERROR
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Hi back,
Should be alright now. Please try this link: MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com" claiming to be
https://drive.google.com/dri
External Email - Use Caution
Hi back,
Should be alright now. Please try this link:
https://secure-web.cisco.com/1LYPTJn0s7YjdWTtPFS55k3z-IqjPfKIscsxsCg4qgjYm5i7hgZ47NYZ8BRHgQAtw4DZhP0bO52JhFFLI8LcEH2uXcDPnyyn6mXbi2PEZLkzub2KbFSDNMpQcj-DHyeMAdbjU8od-fcAnsd58VKB5nnYprNNUzbu4SeyZphu
Hi Ela - Can you make the google doc accessible by all?
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Thursday, June 30, 2022 5:08 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] trac-all -prep -c ERROR
External Email - Use Caution
Thank you for the reply. For some reason, when I change the DCM file to nii and
look at them, in majority of our subjects, the cerebellum and lower brain stem
has been cut off, but in this specific subject, I don't think the CST is
truncated or out o
:38 AM
To: Freesurfer support list
Subject: [Freesurfer] trac-all -prep -c ERROR
External Email - Use Caution
Dear experts,
I am running TRACULA for 90 subjects. Exceptionally, for one of the subjects, I
get the following error in -prep step:
((INFO: Distances between consecutive
External Email - Use Caution
Dear experts,
I am running TRACULA for 90 subjects. Exceptionally, for one of the subjects, I
get the following error in -prep step:
((INFO: Distances between consecutive points in test subject's space are 10 13
12 13 13 12
WARN: Could not find sati
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Kaplan, Elizabeth
Sent: Monday, February 14, 2022 11:25 PM
To: Freesurfer support list
Subject: [Freesurfer] Trac-all -prep -c error
External Email - Use Caution
Hello All,
I am attempting to process images using tracula, howev
).
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Monday, January 10, 2022 4:35 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Trac-all -prep -c error
External Email - Use Caution
Thank you for
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Thank you for constantly improving TRACULA. I believe we don't have reverse
polarity scan or a field-map. We might be able to acquire the field-map though
since the MRI has been acquired locally.
Having that in mind, and just for clarification and m
u and your instructor for bringing this to our attention!
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Sunday, January 9, 2022 8:26 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Trac-all -prep -c
External Email - Use Caution
Dear Anastasia,
I just wanted to share with you that after following up with our instructor,
asking him why he recommended FLIRT rather than bbregister, he clarified that
4-5 years ago when he was using TRACULA for his project,
registration using bbr
rom: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Tuesday, January 4, 2022 3:40 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Trac-all -prep -c error
External Email - Use Caution
Dear Anastasia,
Honestly, this was just based on our instructor'
, Elaheh
Sent: Monday, January 3, 2022 9:09 PM
To: Freesurfer support list
Subject: [Freesurfer] Trac-all -prep -c error
External Email - Use Caution
Dear Freesurfer developers and Anastasia,
Happy new year. I am trying to run trac-all -pep -c dmriEla. dmriEla is my
config file which is
External Email - Use Caution
Dear Freesurfer developers and Anastasia,
Happy new year. I am trying to run trac-all -pep -c dmriEla. dmriEla is my
config file which is also attached to this message. I am also attaching the
trac-all.log file to this email. I am getting the followi
mgh.harvard.edu>
on behalf of Kaplan, Elizabeth
<elizabeth_kap...@brown.edu>Sent: Friday, December 31, 2021 1:56
PMTo: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>Subject: [Freesurfer]
Trac-all -Prep -C
Error External Email - Use
CautionHi All,
harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Kaplan, Elizabeth <
> elizabeth_kap...@brown.edu>
> *Sent:* Friday, December 31, 2021 1:56 PM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* [Freesurfer] Trac-all -Prep -C Error
>
>
>
PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Trac-all -Prep -C Error
External Email - Use Caution
Hi All,
I am working to process DWI images using Tracula, however I am running into an
error when attempting to run the "trac-all -prep -c" command line. The error
reads
External Email - Use Caution
Hi All,
I am working to process DWI images using Tracula, however I am running into
an error when attempting to run the "trac-all -prep -c" command line. The
error reads:
"Error when attempting to read --index file".
I have searched through the arch
urfer-boun...@nmr.mgh.harvard.edu
on behalf of Salar Dini, Elaheh
Sent: Friday, December 3, 2021 12:41 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] trac-all -prep -c error
External Email - Use Caution
Hi all,
I am trying to run trac-all -prep -c dmrirc1.txt, with dmrirc1.txt
External Email - Use Caution
Hi all,
I am trying to run trac-all -prep -c dmrirc1.txt, with dmrirc1.txt being the
configuration file. As soon as I attempt, I get the following error:
ERROR: for B0 distortion correction with reverse-polarity DWIs
ERROR: or for model-based e
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