Re: [Freesurfer] Tracula Question, step 2

2011-11-10 Thread Shannon Buckley
Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] Sent: Wednesday, November 09, 2011 4:57 PM To: shannon.buck...@radiology.ucsf.edu Cc: freesurfer@nmr.mgh.harvard.edu; Mensch, Henry Subject: RE: [Freesurfer] Tracula Question, step 2 Hi Shannon - Which version of FSL do you have? Older versions didn't

Re: [Freesurfer] Tracula Question, step 2

2011-11-10 Thread Anastasia Yendiki
, November 09, 2011 4:57 PM To: shannon.buck...@radiology.ucsf.edu Cc: freesurfer@nmr.mgh.harvard.edu; Mensch, Henry Subject: RE: [Freesurfer] Tracula Question, step 2 Hi Shannon - Which version of FSL do you have? Older versions didn't use to save the mean_dsamples.nii.gz, but that was a while ago. How

Re: [Freesurfer] Tracula Question, step 2

2011-11-09 Thread Shannon Buckley
[mailto:ayend...@nmr.mgh.harvard.edu] Sent: Thursday, November 03, 2011 7:39 AM To: shannon.buck...@radiology.ucsf.edu Cc: freesurfer@nmr.mgh.harvard.edu; Mensch, Henry Subject: Re: [Freesurfer] Tracula Question, step 2 Hi Shannon - Does the original bedpostx run fine on your cluster? You'd

Re: [Freesurfer] Tracula Question, step 2

2011-11-09 Thread Anastasia Yendiki
...@nmr.mgh.harvard.edu] Sent: Thursday, November 03, 2011 7:39 AM To: shannon.buck...@radiology.ucsf.edu Cc: freesurfer@nmr.mgh.harvard.edu; Mensch, Henry Subject: Re: [Freesurfer] Tracula Question, step 2 Hi Shannon - Does the original bedpostx run fine on your cluster? You'd probably have to edit that to get

Re: [Freesurfer] Tracula Question, step 2

2011-11-03 Thread Anastasia Yendiki
Hi Shannon - Does the original bedpostx run fine on your cluster? You'd probably have to edit that to get it to work, it's not made to work on every possible cluster. Bedpostx_seychelles is the modified version that tracula calls that I've modified from the original FSL version so that it

[Freesurfer] Tracula Question, step 2

2011-11-02 Thread Shannon Buckley
Hi Anastasia, I am trying to run Tracula for the first time in our lab and I'm getting errors during step 2 that seem to involve how the program wants to be launched via grid. I've attached the configuration file I'm using and the error message is below... _