Re: [Freesurfer] Tracula prep help

2015-05-22 Thread Anastasia Yendiki
Hi Efrat - I'm guessing that you specified in your config file that you want to perform B0 field inhomogeneity correction (set dob0 = 1) but perhaps did not specify the B0 field map magnitude files correctly (set b0mlist = ...) I'm guessing this because of this line in your log: mri_convert /

[Freesurfer] Tracula prep help

2015-05-13 Thread Efrat Kliper
*Dear Freesurfer experts, **I have encountered the following error while running the tracula **pre-processing command and was hoping you could help me understand how **to correct this.* *from the log file * *INFO: input image orientation is LPS INFO: input image determinant is 3.51562 fslswapdim