Re: [Freesurfer] Tracula problem in pre-processing

2013-07-15 Thread Anastasia Yendiki
Hi Andrew - My guess is that it's something about the file dmri/dwi_orig.mghdti.bvals that's causing the error. Could you please send along that file? Also, how did you fix your previous configuration file problem? Letting the list know about the resolution of the issue would help other

Re: [Freesurfer] Tracula problem in pre-processing

2013-07-15 Thread Gundran, Andrew
. From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu] Sent: Monday, July 15, 2013 12:35 PM To: Gundran, Andrew Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula problem in pre-processing Hi Andrew - My guess is that it's something about the file dmri

[Freesurfer] Tracula problem in pre-processing

2013-07-09 Thread Gundran, Andrew
Helo all, I was finally able to figure out my configuration file problem. But when I run the first step of pre-processing I receive an error about freesurfer being unable to read a certain dwi_frame file. ln -sf /Users/WayneFeng/Desktop/JG005/JG005/JG005/freesurfer/dmri/dwi.nii.gz