Re: [Freesurfer] Troubleshooting fix topology lh stall

2020-03-20 Thread Douglas N. Greve
also, if you run defect-seg, it will create a segmentation of the defects which you can visualize in the volume. Run defect-seg with --help for more info On 3/13/2020 8:45 PM, Bruce Fischl wrote: Hi Ricky how did you try to load the defect_labels? The end of the recon-all.log file lists a de

Re: [Freesurfer] Troubleshooting fix topology lh stall

2020-03-13 Thread Bruce Fischl
Hi Ricky how did you try to load the defect_labels? The end of the recon-all.log file lists a defect with 26K vertices, which is probably too big to fix (it's about 1/5 of a normal surface). You should be able to visualize it by loading the lh.defect_labels file as an overlay on the lh.inflat