Re: [Freesurfer] Using Freesurfer Commands for Neonate

2019-08-15 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Lilla, Thanks for your help. I have used the same command in the recon-all.log file (seen bellow), but I have a doubt for the highlighted part in the command: "mri_aparc2aseg --s SBJ1 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mg

Re: [Freesurfer] Using Freesurfer Commands for Neonate

2019-08-05 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Lilla, Thanks for your help. I have used the same command in the recon-all.log file (seen bellow), but I have a doubt for the highlighted part in the command: "mri_aparc2aseg --s SBJ1 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz

Re: [Freesurfer] Using Freesurfer Commands for Neonate

2019-08-01 Thread Lilla Zollei
"mri_aparc2aseg" should work. Lilla On Fri, 2 Aug 2019, Mahshid Fouladivanda wrote: Dear Experts,   I have a neonate  MRI Image which its parcellation file, surface files and the ribbon are not created by freesurfer. I have created an annotation file for it using "write_annotation". Now, fo

[Freesurfer] Using Freesurfer Commands for Neonate

2019-08-01 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Experts, I have a neonate MRI Image which its parcellation file, surface files and the ribbon are not created by freesurfer. I have created an annotation file for it using "write_annotation". Now, for further processing I need to use freesurf

[Freesurfer] Using Freesurfer Commands for Neonate

2019-07-21 Thread Mahshid Fouladivanda
External Email - Use Caution Dear Experts, I have a neonate MRI Image which its parcellation file, surface files and the ribbon are not created by freesurfer. I have created an annotation file for it using "write_annotation". Now, for further processing I need to use freesur