Re: [Freesurfer] Using Mri_vol2surf

2021-11-17 Thread Douglas N. Greve
R: Option T2.reg is unknown" *Gesendet:* Mittwoch, 17. November 2021 um 16:11 Uhr *Von:* "Douglas N. Greve" *An:* freesurfer@nmr.mgh.harvard.edu *Betreff:* Re: [Freesurfer] Using Mri_vol2surf Can you be more specific about why it is not working? You definitely need to run bbregister t

Re: [Freesurfer] Using Mri_vol2surf

2021-11-17 Thread m-maiworm
ubid --mov mcT2_MAP.nii.gz --init-rr --reg T2.reg --t2 --o /path/to/my/output   I also tried to use T2.reg, but I didn't work: "ERROR: Option T2.reg is unknown"   Gesendet: Mittwoch, 17. November 2021 um 16:11 Uhr Von: "Douglas N. Greve" An: freesurfer@nmr.mgh.harvard.edu Betreff: 

Re: [Freesurfer] Using Mri_vol2surf

2021-11-17 Thread Douglas N. Greve
Can you be more specific about why it is not working? You definitely need to run bbregister to create a registration file On 11/17/2021 7:09 AM, m-maiw...@web.de wrote: External Email - Use Caution Dear List, I first run the recon-all stream using a MPRAGE as input, then bbregister t

[Freesurfer] Using Mri_vol2surf

2021-11-17 Thread m-maiworm
External Email - Use CautionDear List,   I first run the recon-all stream using a MPRAGE as input, then bbregister to move other mri-sequences to this MPRAGE. Now I want to transfer the values from these mri-sequences to the surface, so that I can calculate on the surface and perf