[Freesurfer] Using Schaefer 2018 atlas with FreeSurfer

2019-03-14 Thread Fatih SOĞUKPINAR
External Email - Use Caution Dear FreeSurfer developers *For my MRI data, I have cortical parcellations and segmentations for the Destrieux and Desikan-Killiany atlases. Now, **I am attempting to use Schaefer 2018 atlas (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_pr

Re: [Freesurfer] Using Schaefer 2018 atlas with FreeSurfer

2019-03-18 Thread Thomas Yeo
External Email - Use Caution Hi Fatih, Instead of mri_label2vol and mri_concat, you can simply call mri_aparc2aseg --s yoursubject --annot Schaefer2018_400Parcels_7Networks_order_native --o $SUBJECTS_DIR/yoursubject/mri/outputfile.mgz One thing to note: "mri_aparc2aseg" will aut