Hey experts,
Thank you very much for your advice!
So I guess my best guess would be to use recon-all with -nuintensitycor-3T
and add an expert option file for -b 20 and -n 5.
These flags belong to the mri_normalize binary?
Best regards
Thomas
On Thu, Jul 26, 2012 at 4:12 PM, Bruce Fischl
Hi Mehul
it's really all empirical. You just don't want the intensity
normalization to erode the gray/white boundary.
cheers
Bruce
On Wed, 25 Jul 2012, Mehul
Sampat wrote:
Hi Thomas,
The following message posted by Michael Harms
Hi Michael
that's a good thought. Let me talk to Nick, and see if we should default
to it and have a 1.5T flag instead
Bruce
On Thu, 26 Jul 2012, Michael Waskom
wrote:
Yes, that flag still works in 5.1.
Bruce, think these parameters could be default in 5.2? It's a long extra
flag (that
Hi Thomas,
The following message posted by Michael Harms
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg20991.html
has some very useful options. I recently noticed that they help us with a
very similar problem...
Also, I recall that for FS v5.0 there was a flag -nuintensitycor-3T
