: [Freesurfer] WM lobes and Corpus Callosum
You can use mri_binarize to replace the CC values with WM values, eg
mri_binarize --i aseg.mgz --replace 251 2 --replace 252 2 ... --o
aseg.nocc.mgz
If your version of mri_binarize does suppor the --replace option, you
can get this versoin
https
You can use mri_binarize to replace the CC values with WM values, eg
mri_binarize --i aseg.mgz --replace 251 2 --replace 252 2 ... --o
aseg.nocc.mgz
If your version of mri_binarize does suppor the --replace option, you
can get this versoin
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mr
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bharadwaj, Pradyumna -
(prad) [p...@email.arizona.edu]
Sent: Wednesday, January 18, 2017 12:48 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] WM lobes and Corpus Callosum
Hello Anastasia
hemisphere ?
Best,
-Prad
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Yendiki, Anastasia
Sent: Tuesday, January 17, 2017 5:05 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] WM lobes and Corpus Callosum
Hi Prad - mri_aparc2aseg assigns WM
,
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bharadwaj, Pradyumna -
(prad) [p...@email.arizona.edu]
Sent: Tuesday, January 17, 2017 5:37 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] WM lobe
Hi,
I've been trying to create WM lobes using the following steps:
1) mri_annotation2label --lobesStrict
2) Outputting the labels from step 1, & creating a simpler annotation without
limbic and insular lobes
3) Labeling the WM using mri_aparc2aseg (mri_aparc2aseg --s MySub --annot
Step2Anno