[Freesurfer] Warping a significance map to MNI space

2014-03-11 Thread Thomas Allan
Hi I have proceed my data and produced a significance map across all my subjects and this looks fine on the fsaverage inflated brain. To compare to some other results, I really need to wrap this map into standard MNI152 space. To do this, I have used the following commands but with a problem at

Re: [Freesurfer] Warping a significance map to MNI space

2014-03-11 Thread Douglas N Greve
Almost right. Try this command (reversed mov and targ and added --inv): mri_vol2vol --inv –targ SIG.fsspace.mgz –mov /$FSL_DIR$/data/standard/MNI152_T1_2mm.nii.gz –o SIG_MNI.nii –interp nearest –reg /$FS_DIR$/average/mni152.register.dat I know, it is a little confusing doug On 03/11/2014 04