[Freesurfer] When no control points are needed...

2018-12-03 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Dear Bruce and Bram, After improving the pial surface for my participants, I have seen that some of them do not need control points. My question is: for those ones, should I run -autorecon2 and -autorecon3 or only -autorecon3. Hi Bruce and Bram, I wil

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Bruce Fischl
Hi Rosalia you always have to run autorecon3 every time autorecon2 is run cheers Bruce On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: External Email - Use Caution Dear Bruce and Bram, After improving the pial surface for my participants, I have seen that some of them

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Hi Bruce, Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Hi Bruce, Sorry for double posting. I am advancing, but there is still some point I am missing. I would greatly appreciate your help: rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd /home/rosalia/Desktop/transferrosalia@rosalia-Lenovo-Y520-15IKBN ~/

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Bruce Fischl
is that the right directory/path on your end? On Mon, 3 Dec 2018, Rosalia Dacosta Aguayo wrote: External Email - Use Caution Hi Bruce, Thank you for your reply. I am having problems when trying to upload the two files with FTP, it seems the problem is with the directory. ro

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Hi Bruce, This is the directory where I have the data: /home/rosalia/Desktop/transfer And I changed the directory before doing FTP...and then asked again for the directory and I wrote the same directory and then when asked me for the name of the fil

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Diamond, Bram Ryder
_ From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Rosalia Dacosta Aguayo Sent: Monday, December 3, 2018 10:54:53 AM To: Freesurfer support list Subject: Re: [Freesurfer] When no control points are needed... External Email - Use Caution Hi Bruce, This

Re: [Freesurfer] When no control points are needed...

2018-12-03 Thread Rosalia Dacosta Aguayo
tal > 149 13th Street > Charlestown, MA 02129 > (p): 617-726-6598 > > -- > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Rosalia Dacosta > Aguayo > *Sent:* Monday, December 3, 2018 10:5