We get a lot of variable results with FLAIR. Sometimes it helps,
sometimes it hurts. FLAIR scans themselves can be very variable across
sites. If it is looking like it is hurting your results, then just run
without it.
On 3/12/2021 11:07 AM, Xiaojiang Yang wrote:
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Dear FS developers,
I have run FS’s recon-all on many cases, with and without -FLAIR options. I
found the pial surface results (?h.pial) I obtained without -FLAIR option
fit to the original image (subjected/mri/orig.mgz) much better than those
with
