Hi all
Could anyone help me with extracting the wmparc volume stats in accordance
with Destrieux atlas?
As it stands now the segmentations corresponding to whitematter beneath
Destrieux 2009 parcellations are returned empty when called for
Many thanks
Lena
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Le
To get the Destrieux atlas parcellations in the wmparc, first have a
look at the -wmparc section of the recon-all table:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
those last two commands would be modified like this:
mri_aparc2aseg --s --labelwm --hypo-as-wm --rip-unknown
--ribbo
aparc2aseg using Destrieux atlas now seems to run OK for a different subject
anyway - and I managed to get the same image as you did. But there are two
problems:
1. when I do tkmedit subjid T1.mgz -segmentation wmparc.a2009s.mgz with
color LUT, it still shows Killiany/Desikan conventions for wm par
