for your reply!
Sincerely
Woo Suk, Tae
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Monday, October 01, 2007 9:03 PM
To: Woo Suk, Tae
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] automated parcellation: training set of Freesurfer
there are two
there are two training sets we use for the two difference parcellation
schemes. Once consists of about 40 subjects distributed into 4 groups
(young, middle aged, elderly and Alzheimer's for the Desikan-Killiany
atlas). The other is 14 young and middle aged subjects in the Destrieux
atlas.
: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] automated parcellation: training set of Freesurfer
there are two training sets we use for the two difference parcellation
schemes. Once consists of about 40 subjects distributed into 4 groups
(young, middle aged, elderly and Alzheimer's
Dear experts.
In the previous technical papers of Freesurfer, the the method of automated
parcellation was described,
This procedure automatically assigns a neuroanatomical label to each voxel
in an MRI volume based on probabilistic information automatically estimated
from manually labeled
Hi Goulven,
we need to know what the mris_register command line was, and what the
mris_ca_label command line was, as well as what version of freesurfer you
are running in general.
cheers,
Bruce
On Fri, 4 Nov 2005, Goulven Josse wrote:
Hi Xiao,
I don't have a recon-all.log file because we
Hi Goulven,
could you send us an image with some arrows on it?
cheers,
Bruce
On Wed, 2 Nov 2005,
Goulven Josse wrote:
Dear Freesurfers,
We have used the automated parcellation (Fischl et al, 2004) in several
subjects and noticed in some cases labeling of the lateral part of a gyrus (i
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can
you send pics displayed in tksurfer? Also, to clarify, this is a label
for a subject shown on that subject (ie, you did not map the label from
one subject to another)?
thanks
doug
Goulven Josse wrote:
Hi,
I
Hi Goulven,
can you send the recon-all.log file for one of these subjects? What
version of freesurfer are you using?
Bruce
On Thu, 3 Nov 2005, Goulven Josse
wrote:
On Nov 3, 2005, at 10:59 AM, Doug Greve wrote:
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can you
Hi Goulven,
There should be a recon-all.log file under the
$SUBJECTS_DIR/subject/script/
directory, if you processed the data using the recon-all script.
The log files you attached were produced by the tools to visuallize the
results, not by the programs that create the label result. Thus we
Dear Freesurfers,
We have used the automated parcellation (Fischl et al, 2004) in several
subjects and noticed in some cases labeling of the lateral part of a
gyrus (i mean the part that's visible on the folded surface), as
belonging to a sulcus. The example I have in mind is the labeling of
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