Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-27 Thread Douglas N Greve
as a label. >>> >>> Tracy >>> >>> >>> >>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve >>> [gr...@

Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-26 Thread Barbour, Tracy,M.D.
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve >> [gr...@nmr.mgh.harvard.edu] >> Sent: Monday, July 20, 2015 2:28 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] bad registration using mri_vol2vol >> >> where did lh.amyg.faceaw_func.an

Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-24 Thread Douglas Greve
mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, July 20, 2015 2:28 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] bad registration using mri_vol2vol > > where did lh.amyg

Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-23 Thread Barbour, Tracy,M.D.
From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, July 20, 2015 2:28 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bad registration using mri_vol2vol where did

Re: [Freesurfer] bad registration using mri_vol2vol

2015-07-20 Thread Douglas N Greve
where did lh.amyg.faceaw_func.anatconstr.p05.5.3CRFH.n70.mgz come from? It must be in the space of $SUBJECTS_DIR/fsaverage/mri/orig.mgz for that transform to work On 07/17/2015 02:43 PM, Barbour, Tracy,M.D. wrote: > > > Hello, > > I'm trying to convert an ROI mask I created in MNI305 space to MN

[Freesurfer] bad registration using mri_vol2vol

2015-07-17 Thread Barbour, Tracy,M.D.
Hello, I'm trying to convert an ROI mask I created in MNI305 space to MNI152. After running MRI_vol2vol the registration looks off (too anterior). Here are my commands: mri_convert -ot nii lh.amyg.faceaw_func.anatconstr.p05.5.3CRFH.n70.mgz lh.amyg.faceaw_func.anatconstr.p05.5.3CRFH.n70.nii