Hi Elizabeth
check out the help of mri_binarize. I think something like:
mri_binarize --all-wm --i aseg.mgz --o aseg.wm.mgz
should do the trick
cheers
Bruce
On Wed, 16 Aug
2017, Elizabeth Dao wrote:
> Dear experts,
> I need a binarized wm mask for my analysis. The wm.mgz volume includes
> su
Dear experts,
I need a binarized wm mask for my analysis. The wm.mgz volume includes
subcortical structures so I would like to use the aseg.mgz volume. I was
hoping someone could give me instructions (command-line) on how to binarize
aseg.mgz so that the wm=1 and everything else is 0.
Thank you i
