Hi Khadka,
Although it is an old mail (sorry), because this topic came up in
another thread, I reply here also.
You need to edit the brain.finalsurfs.manedit.mgz file. Create this file
by copying :
cp brain.finalsurfs.mgz brain.finalsurfs.manedit.mgz
then edit the manedit file.
Best, Martin
Dear freesurfer community,
My question is directed to those who have experience with editing
brain.finalsurfs.mgz.
According to the tutorials, after making edits on brainmask.finalsurfs.mgz
(which is normally done when the pial surface is not accurate), we can run,
recon-all -autorecon-pial -
