Re: [Freesurfer] brainmask error

2014-08-25 Thread Mads Jensen
Hi Bruce (and the rest of the list), It looks better (see attached) but it still look like it removed too much. cheers for the point though, Mads On 21/08/14 16:22, Bruce Fischl wrote: Hi Mads what does it look like if you move off the mideline? Or check a coronal view? Sagittal views of the

Re: [Freesurfer] brainmask error

2014-08-25 Thread Bruce Fischl
Are you sure? Did you flip back and forth between this and a volume with the skull? On Aug 25, 2014, at 7:13 AM, Mads Jensen mje.m...@gmail.com wrote: Hi Bruce (and the rest of the list), It looks better (see attached) but it still look like it removed too much. cheers for the point

Re: [Freesurfer] brainmask error

2014-08-21 Thread Bruce Fischl
Hi Mads what does it look like if you move off the mideline? Or check a coronal view? Sagittal views of the midline are notoriously bad for judging skull stripping accuracy cheers Bruce On Tue, 19 Aug 2014, Mads Jensen wrote: Dear list, I have problem with the brainmask from a subject