Re: [Freesurfer] check FS to native registration in freeview

2019-05-14 Thread Greve, Douglas N.,Ph.D.
probably easier to do the other way around, eg, tkmeditfv subjectname orig.mgz -surfs -ov example_func.nii.gz -reg reg.dat This is a frontend that will run freeview On 5/14/2019 5:57 AM, Sam W. wrote: External Email - Use Caution Thank you Douglas for your response. That's what I

Re: [Freesurfer] check FS to native registration in freeview

2019-05-14 Thread Sam W.
External Email - Use Caution Thank you Douglas for your response. That's what I thought but wasn't sure. I have another question if you don't mind. I would like to load the wm surfaces as well, and overlay them on top of the mean functional scan. However they are in conformed

Re: [Freesurfer] check FS to native registration in freeview

2019-05-13 Thread Greve, Douglas N.,Ph.D.
you have to use the output of mri_label2vol in the freeview command On 5/13/2019 5:02 PM, Sam W. wrote: External Email - Use Caution Hi, After bbregister, I ran mri_label2vol to convert a segmentation file to native functional space mri_label2vol --seg s01/mri/aseg.mgz --reg reg.dat

[Freesurfer] check FS to native registration in freeview

2019-05-13 Thread Sam W.
External Email - Use Caution Hi, After bbregister, I ran mri_label2vol to convert a segmentation file to native functional space mri_label2vol --seg s01/mri/aseg.mgz --reg reg.dat --subject s01 --o aseg-in-func.nii --temp example_func.nii Now I would like to check how well the