You need to find the correct CDF file, eg, if the final FWHM is 12, it
would be in
$FREESURFER_HOME/average/mult-comp-cor/fsaverage/lh/cortex/fwhm12/abs/th30/mc-z.cdf
To get the FWHM look in glmdir/fwhm.dat and round down
in the mc-z.cdf file, find the row where the MaxClustCDF drops below
.
External Email - Use Caution
Dear experts,
To perform a Monte Carlo based cluster correction, I have run the following
line:
mri_glmfit-sim --glmdir glmdir --mczsim 3 abs --cwp 0.05 --2spaces --a2009s
I need to figure out which is the minimum number of voxels required for a
clu
Use the --minarea option
doug
Jürgen Hänggi wrote:
> Dear FS experts
>
> We would like to threshold the cluster size in the sig.mgh image in order to
> exclude clusters that are only a few vertices in size, but I cannot find
> this option
>
> Is it possible to do it within FS? If yes, how to do i
Dear FS experts
We would like to threshold the cluster size in the sig.mgh image in order to
exclude clusters that are only a few vertices in size, but I cannot find
this option
Is it possible to do it within FS? If yes, how to do it?
Thanks in advance
Regards
Jürgen
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