[Freesurfer] comparison between two hemisphere in single subject

2016-02-11 Thread Ashkan Faghiri
Hello, I want to compare the two hemisphere in one subject (thickness for example). should I use? surfreg --s $subject --t fsaverage_sym --lh surfreg --s $subject --t fsaverage_sym --lh --xhemi then what? how can I compare the two hemisphere of one subject? Regards, Ashkan -- -- Ashkan

Re: [Freesurfer] comparison between two hemisphere in single subject

2016-02-11 Thread Douglas N Greve
Follow the further instructions in https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi ie, mris_preproc (which will sample into the common space (fsaverage_sym) and compute the difference) and mris_fwhm, if you want to smooth it. The result will be on fsaverage_sym. If you want to map it back to