Hi Mike
can you tar and gzip a subject dir with strange results? All manually
specified CPs are included. Then there is an initial intensity segmentation
for stuff that is very likely to be wm, after-which there are a set of
region-growing steps. That's actually the cortical one.The subcortical
Hi Bruce,
Can you elaborate briefly on the 6-connected bit? e.g., if one places a
CP manually in a voxel, and that CP is not face-connected on all sides
to either other manually-placed CPs, or CPs determined automatically by
FS, then it doesn't get counted as a CP after all?
Is there any volume
Hi Mike
it's a bit hard to state the region of effect for the control points.
Essentially we go through and label voxels as control points or not based
on their intensity, intensity gradient and connectivity (that is, the must
be 6-connected to other control points) then build a Voronoi diagra
Hi Michael,
I had the same problem too. It might be because of the type of scanner you
are using. I added -washu_mprage flag, it pretty much helped me (I did not
had to add a lot of controls points and so on so forth. You can go through
the link below.
https://mail.nmr.mgh.harvard.edu/pipermail//f
Hi guys,
We are currently trying to fix some errors in the white/pial surfaces
where there are thin white matter strands by using control points, and
are noticing a couple things:
1) The resulting WM surface in the area of the CPs can end up too far
into the GM instead. Given that, is there any
