urfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Monday, November 04, 2013 5:22 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] convert (resample) fsaverage/mri/aseg.mgz into
> $FSLDIR Nifti wi
u
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Roderick McColl
> [roderick.mcc...@utsouthwestern.edu]
> Sent: Monday, November 04, 2013 3:37 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: [Freesurfer] convert (resample) fsaverage/mri/aseg.mgz into $FSLDIR
> Nift
, November 04, 2013 3:37 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] convert (resample) fsaverage/mri/aseg.mgz into $FSLDIR
Nifti with MNI152_T1_1mm target
I am obviously using mri_vol2vol incorrectly but I'm stumped.
Goal is to get the $SUBJECTS/fsaverage/mri/aseg.mgz file
try this command instead
mri_vol2vol --mov $FSLDIR/data/standard/MNI152_T1_1mm.nii.gz \
--targ aseg.mgz --inv --reg transforms/reg.mni152.1mm.dat --o
asegmni152.nii.gz
On 11/04/2013 04:37 PM, Roderick McColl wrote:
> I am obviously using mri_vol2vol incorrectly but I'm stumped.
>
> Goal i
Hi Roddy
can you check whether fslview shows the directions as correct even if it
displays it upside down? That is, do they still know which direction is
superior, anterior, etc...?
cheers
Bruce
On Mon, 4 Nov 2013, Roderick McColl wrote:
> I am obviously using mri_vol2vol incorrectly but I
I am obviously using mri_vol2vol incorrectly but I'm stumped.
Goal is to get the $SUBJECTS/fsaverage/mri/aseg.mgz file into the FSL MNI152
space to do some fslmaths.
>From looking around it seemed the command to accomplish this is (inside
>$SUBJECTS/fsaverage/mri)
mri_vol2vol --targ $FSLDIR/da
