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Thank you for your help! I will try that.
Best,
Georgia
> On 8 Jan 2021, at 6:22 PM, Georgia Kapizioni wrote:
>
> Let me rephrase:
>
> I am running an analysis with two groups, a patient group (n=23) and a
> healthy control group (n=24). I have
d.edu"
Subject: Re: [Freesurfer] Correcting pial surface with Flair sequence
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Let me rephrase:
I am running an analysis with two groups, a patient group (n=23) and a healthy
control group (n=24). I have accomplished 3DT1 recons for all participants. N
External Email - Use Caution
Let me rephrase:
I am running an analysis with two groups, a patient group (n=23) and a healthy
control group (n=24). I have accomplished 3DT1 recons for all participants. Now
I want to correct pial surface using 3D Flair images.
However, I have
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] Correcting pial surface with Flair sequence
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Thank you for your reply.
However, my questions referred to whether a 3D Flair could also work for pial
surface correction, or only 3D T2 flair i
External Email - Use Caution
Thank you for your reply.
However, my questions referred to whether a 3D Flair could also work for pial
surface correction, or only 3D T2 flair is suitable and if it is ok for all
participants not to have the same slice thickness on Flair, as I
d.edu"
Subject: [Freesurfer] Correcting pial surface with Flair sequence
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Hello Freesurfer Developers,
I am conducting a group analysis between a patients and a control group. I have
accomplished recon-all individual analysis and I want to correct pial surface
External Email - Use Caution
Hello Freesurfer Developers,
I am conducting a group analysis between a patients and a control group. I have
accomplished recon-all individual analysis and I want to correct pial surface
using 3D Flair.
I would like to ask two specific things:
1.
Julia, could you send a snapshot of the area in question?
On Apr 2, 2012, at 5:33 AM, Richter, Julia
julia.rich...@med.uni-heidelberg.de wrote:
Dear freesurfer experts,
I have several subjects whose cortical grey matter isn't included in the pial
surface. Is there any possibility to
Hi all,
Regarding pial inaccuracies, should I edit brain.mgz or brainmask.mgz ?
I'm asking this because it seems to me that correcting brainmask.mgz and
running autorecon2 (-cp, -wm or -pial) doesn't seem to fix the problem.
Furthermore, when I was going through the tutorials it suggests
