[Freesurfer] dcm2nii and recon all

2011-09-02 Thread Carolina Valencia
Dear FS' users, I have a 3D T1 from a GE scanner which I convert with dcm2nii to use it with recon-all, but I got 3 images: o -- original oo -- orthogonal co -- cropped image Which I should use to run the command recon-all? thanks! Carolina ___ Freesu

Re: [Freesurfer] dcm2nii and recon all

2011-09-02 Thread Douglas N Greve
I have no idea, but probably the original. doug Carolina Valencia wrote: > Dear FS' users, > > I have a 3D T1 from a GE scanner which I convert with dcm2nii to use > it with recon-all, but I got 3 images: > o -- original > oo -- orthogonal > co -- cropped image > > Which I should use to run the

Re: [Freesurfer] dcm2nii and recon all

2011-09-02 Thread Alfredo Damasceno
I am also using dcm2nii and running recon-all with the original image. It is working ok so far. Alfredo > Date: Fri, 2 Sep 2011 12:30:26 -0400 > From: gr...@nmr.mgh.harvard.edu > To: cvalen...@linkdx.com.co > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] dcm2ni