[Freesurfer] dicom to mgz

2008-06-30 Thread Daniel H Choi
Hi, I am trying to change my dicom files to mgz format. I know recon-all can do this, however after the mgz file is created, tkmedit will not display it. As described in the freesurfer-wiki site, there are steps outlining 2 acquisition directories. What does this specifically refer to? I assumed

Re: [Freesurfer] dicom to mgz

2008-06-30 Thread Bruce Fischl
you needa space between the -i and the path. Also, did you mean to include the .mgz in the subject name? The volumes that are created will have the .mgz extension, but we don't usually name our subjects with .mgz On Mon, 30 Jun 2008, Daniel H Choi wrote: Hi, I am trying to change my dicom

Re: [Freesurfer] dicom to mgz

2008-06-24 Thread Bruce Fischl
do you mean all the dicoms from a single run? Sure, if you give mri_convert the name of one file in the run as input and a .mgz filename as output it will do it On Tue, 24 Jun 2008, Daniel H Choi wrote: Hi, I was wondering if there was a way to change all of the dicom files from one brain