[Freesurfer] different vertexes and faces on pial and inflated surface of the same hemisphere

2011-04-03 Thread Forrest Sheng Bao
hi all, I encountered a strange problem today. I used recon-all -all to get surfaces of a subject. I have no problem with his/her left hemisphere. But for the right hemisphere, the numbers of vertexes and faces of pial surface are different from those of the inflated surface. I checked the heade

Re: [Freesurfer] different vertexes and faces on pial and inflated surface of the same hemisphere

2011-04-03 Thread Bruce Fischl
Hi Forrest that happens if something fails, or was incompletely rerun. Try running recon-all -s -make all and see what it does. It should fix your problem cheers Bruce On Sun, 3 Apr 2011, Forrest Sheng Bao wrote: > hi all, > > I encountered a strange problem today. I used > > recon-all -all

Re: [Freesurfer] different vertexes and faces on pial and inflated surface of the same hemisphere

2011-04-05 Thread Sita Kakunoori
Hi Forrest, You can probably try running recon-all -make all -s and see if that fixes the problem. Sita. On Sun, 3 Apr 2011, Forrest Sheng Bao wrote: > hi all, > > I encountered a strange problem today. I used > > recon-all -all > > to get surfaces of a subject. I have no problem with his