Re: [Freesurfer] edit failure

2014-11-10 Thread Octavian Lie
Thank you, Bruce I tried to upload the subject (tar.gz, 183 Mb) to the ftp, followed instructions ftp surfer.nmr.mgh.harvard.edu anonymous my email cd transfer/incoming put /usr/local/fs5.3/freesurfer/subjects/rightgyrusfailure.tar.gz and I get this: local:

Re: [Freesurfer] edit failure

2014-11-10 Thread Bruce Fischl
try changing the local dir to /usr/local/fs5.3/freesurfer/subjects and just putting the file without a path cheers Bruce On Mon, 10 Nov 2014, Octavian Lie wrote: Thank you, Bruce I tried to upload the subject (tar.gz, 183 Mb) to the ftp, followed instructions ftp

Re: [Freesurfer] edit failure

2014-11-10 Thread Octavian Lie
Dear Bruce, It worked, I transferred it and is ready for view. The original recon was with the command recon-all -3T -openmp 8 -notal-check (the raw volume was analyze). I noted a small gyrus excluded from the surfaces, located in the right hemisphere posteriorly; the recon also did not include

Re: [Freesurfer] edit failure

2014-11-09 Thread Bruce Fischl
Hi Octavian If you upload the subject we will take a look Cheers Bruce On Nov 9, 2014, at 10:40 PM, Octavian Lie octavian@gmail.com wrote: Dear all, 1. in the attached there is a gyrus that does not incorporated into surfaces, whatever I do (wm edits/topological defects-cloning