Use --fsm shiftmap.nii.gz (ie, it needs an extension)
On 04/01/2015 05:02 PM, Marco Loggia, PhD wrote:
> Hi Doug,
>
> I just noticed that when I run epidewarp, it gives me a strange " 'if:
> Expression Syntax' " error message, even if I have no if-statements in
> my script (see below for an exam
Hi Doug,
I just noticed that when I run epidewarp, it gives me a strange " 'if:
Expression Syntax' " error message, even if I have no if-statements in my
script (see below for an example of usage). Note that I use the full path for
epidewarp because I am using FSL 5.0.7.
Is this a bug?
Thanks
Can you send me the result of "which epidewarp.fsl" (no quotes)?
Marco Loggia wrote:
> Hi Doug,
> Below are my paths:
>
> FREESURFER_HOME /usr/local/freesurfer/stable5_0_0
> FSFAST_HOME /usr/local/freesurfer/stable5_0_0/fsfast
> FSF_OUTPUT_FORMAT nii
> SUBJECTS_DIR /autofs/cluster/ra
Hi Doug,
Below are my paths:
FREESURFER_HOME /usr/local/freesurfer/stable5_0_0
FSFAST_HOME /usr/local/freesurfer/stable5_0_0/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /autofs/cluster/randy/2/lbp/freesurfer/patients+controls
MNI_DIR /usr/local/freesurfer/stable5_0_0/mni
FSL_D
Marco, which version are you using?
doug
Marco Loggia, PhD wrote:
> Dear Surfers,
>
> In the past couple of days epidewarp.fsl has been failing, reporting
> "vsm-smooth: Command not found" (see below). Epidewarp was run using
> the same parameters, and within the same script that I have been usi
Dear Surfers,
In the past couple of days epidewarp.fsl has been failing, reporting
"vsm-smooth: Command not found" (see below). Epidewarp was run using the same
parameters, and within the same script that I have been using with no problems
for many months... Has there been a software update th
