Hi I downloaded about Tuesday and this morning. However when I download a bit later to day I got a working mri_segstats.It print out mri_segstats --all-infoProgramName: mri_segstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/02-19:57:40-GMT BuildTimeStamp: Jun 20 2012 12:45:04 CVS: $Id: mri_segstats.c,v 1.86 2012/07/16 14:39:07 greve Exp $ User: knutjb Machine: dmed4960 Platform: Linux PlatformVersion: 3.2.0-32-generic CompilerName: GCC CompilerVersion: 40100
Best regards Knut J On 10/02/2012 06:04 PM, Douglas N Greve wrote: > Hi Knut, when did you download mri_segstats? Can you send me the result of > mri_segstats --all-info > doug > > On 10/02/2012 01:42 AM, Knut J Bjuland wrote: >> I have download the latest verion of mri_segstats from the release >> notes. But it does not generate asegstats. >> >> >> 4 x86_64 x86_64 GNU/Linux >> #-------------------------------------------- >> #@# ASeg Stats Tue Oct 2 07:36:17 CEST 2012 >> /home/knutjb/freesurfer/20_ucsd_automatic_version2/004 >> >> mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv >> mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent >> --subcortgray --in mri/norm.mgz --in-intensity-name norm >> --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray >> --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject 004 >> >> ERROR: Option --sum unknown >> >> #------------------------------------------ >> >> recon-all -s 004 finished without error at Tue Oct 2 07:36:17 CEST 2012 >> done >> >> knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats >> USAGE: mri_label2vol >> >> Possible inputs: >> --label labelid<--label labelid> >> --annot annotfile : surface annotation file >> --seg segpath : segmentation >> --aparc+aseg : use aparc+aseg.mgz in subjectdir as seg >> >> --temp tempvolid : output template volume >> >> --reg regmat : VolXYZ = R*LabelXYZ >> --regheader volid : label template volume (needed with --label or >> --annot) >> for --seg, use the segmentation volume >> --identity : set R=I >> --invertmtx : Invert the registration matrix >> >> --fillthresh thresh : between 0 and 1 (def 0) >> --labvoxvol voxvol : volume of each label point (def 1mm3) >> --proj type start stop delta >> >> --subject subjectid : needed with --proj or --annot >> --hemi hemi : needed with --proj or --annot >> --surf surface : use surface instead of white >> >> --o volid : output volume >> --hits hitvolid : each frame is nhits for a label >> --label-stat statvol : map the label stats field into the vol >> --stat-thresh thresh : only use label point where stat> thresh >> --offset k : add k to segmentation numbers (good when 0 should not >> be ignored) >> >> --native-vox2ras : use native vox2ras xform instead of tkregister-style >> --version : print version and exit >> --help >> >> $Id: mri_label2vol.c,v 1.39 2012/06/08 17:29:54 greve Exp $ >> >> knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats --sum >> ERROR: Option --sum unknown >> >> >> >> Knut J >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
