[Freesurfer] error in segmentHA_T2.sh

2017-11-29 Thread Cong
Dear freesurfer experts I am trying segment hippocampal and amygdala subregions in dev version(freesurfer-i386-apple-darwin11.4.2-dev-20171024), the segmentHA_T1.sh works well. However, when I try to add a T2 propeller sequence it doesn’t work. I am sure the T2.nii file is in mri folder, and

Re: [Freesurfer] error in segmentHA_T2.sh

2017-11-29 Thread Iglesias Gonzalez, Eugenio
:55 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] error in segmentHA_T2.sh Dear freesurfer experts I am trying segment hippocampal and amygdala subregions in dev version(freesurfer-i386-apple-darwin11.4.2-dev-20171024), the segmentHA_T1.sh works well. However, when I try to ad

Re: [Freesurfer] error in segmentHA_T2.sh

2017-11-29 Thread Cong
Dear Eugenio, Using full path solved the problem, thank you very much! Best Regards Cong > From: "Iglesias Gonzalez, Eugenio" > Subject: Re: [Freesurfer] error in segmentHA_T2.sh > To: Freesurfer support list > Message-ID: <2706b24c-1442-46b9-8a8b-15492520b...@