: Thursday, July 28, 2022 2:05 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] etiv value differs if using recon all vs freesurfer
dev
The "cvs_version" is just for that particular binary. look in
$FREESURFER_HOME/build-stamp.txt. There should also be a build
on behalf of Miriam
Taza <mailto:miriam.t...@mail.mcgill.ca>
*Sent:* Monday, July 25, 2022 2:45 PM
*To:* Freesurfer support list
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject:* Re: [Freesurfer] etiv value differs if using recon all vs
freesurfer dev
External Email - Use Caution
I a
? It was done in the past.is there a log?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Thursday, July 28, 2022 1:27 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] etiv value differs if using recon all vs
eve
*Sent:* Sunday, July 24, 2022 10:38 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] etiv value differs if using recon all vs
freesurfer dev
I cannot replicate this on my data. The differences are rather extreme
(factors of 3). Can you get us access to the one with the larg
reesurfer support list
Subject: Re: [Freesurfer] etiv value differs if using recon all vs freesurfer
dev
External Email - Use Caution
I am getting eerror: mri_segstats: could not open atlas transform file
/export01/local/freesurfer/subjects/sub-1221084/mri/transforms/talairach.xfm
The results
:* Sunday, July 24, 2022 10:38 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] etiv value differs if using recon all vs
freesurfer dev
I cannot replicate this on my data. The differences are rather extreme
(factors of 3). Can you get us access to the one with the largest
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] etiv value differs if using recon all vs freesurfer
dev
I cannot replicate this on my data. The differences are rather extreme (factors
of 3). Can you get us access to the one with the largest difference? YOu can
also try regenerating the aseg.stats file, eg,
cd
I cannot replicate this on my data. The differences are rather extreme
(factors of 3). Can you get us access to the one with the largest
difference? YOu can also try regenerating the aseg.stats file, eg,
cd subject/
mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/redo.aseg.stats
--pv
External Email - Use Caution
Hello,
I am getting different etiv values when running recon(orange) all VS
mri_sclimbic_seg (blue). My analysis uses limbic volumes extracted from the dev
version but I am not sure if I should just use the etiv from recon all, given
the data is
