Re: [Freesurfer] freesurfer longitudinal issue

2019-04-10 Thread Martin Reuter
Hi Maxime, the longitudinal stream aligns images across time. This registration can (and should) be checked by opening the base/mri/norm.mgz and the norm.mgz from the tp.long.base (longitudinal) directories. They should all align. Your example looks like you might have openend the images from t

Re: [Freesurfer] freesurfer longitudinal issue

2019-04-11 Thread Martin Reuter
Hi Maxime, please keep previous conversation in the email (so that it is easier to check the original question). Also let’s keep this on the list. I do not understand what you mean with “there is not strict alignment”. If you open the norm.mgz from base, tp1.long.base and tp2.long.base they s