Re: [Freesurfer] freesurfer selxavg3-sess error

2018-11-12 Thread Greve, Douglas N.,Ph.D.
Can you include the command line and full terminal output? From what you have below, it says it is only finding one non-null condition, so double check your par files On 11/12/2018 04:58 PM, Francesca Strappini wrote: > > External Email - Use Caution > > Thank you! > I changed the event

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-11-12 Thread Francesca Strappini
External Email - Use Caution Thank you! I changed the event file and re-run the analysis. I got an error message when creating the contrast: mkanalysis-sess -analysis FF-MonkeyCassis-event.sm03.lh -surface MonkeyCassis lh -fwhm 3 -fsd bold -per-run -event-related -paradigm FF.par

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-11-07 Thread Greve, Douglas N.,Ph.D.
When you ran mkanalysis-sess, did you specify two event types? You only have one non-null event in your paradigm file. On 10/28/2018 08:57 AM, Francesca Strappini wrote: > > External Email - Use Caution > > Thanks! Now it's loading correctly my event file. > However, when I run selxavg3-s

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-10-28 Thread Francesca Strappini
External Email - Use Caution Thanks! Now it's loading correctly my event file. However, when I run selxavg3-sess I get this error message: selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF -no-con-ok outanadir = /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF/bold/

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-05-02 Thread Douglas N. Greve
oops, sorry. Looks like it is having a problem loading your paradigm file. Check that. If the error does not pop out to you then send it to me. On 05/02/2018 10:06 AM, Francesca Strappini wrote: > Hi, sorry, maybe my last email got lost. Is there anything I can try > to fix this problem with se

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-05-02 Thread Francesca Strappini
External Email - Use Caution Hi, sorry, maybe my last email got lost. Is there anything I can try to fix this problem with selxavg3-sess? Thanks! Best Francesca 2018-04-24 20:35 GMT+03:00 Francesca Strappini : > Thank you for the reply! > I deleted the contrasts and run this com

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-04-24 Thread Francesca Strappini
External Email - Use Caution Thank you for the reply! I deleted the contrasts and run this command line: selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF -no-con-ok --- matlab output MATLAB is selecting SOFTWARE OPENGL rendering.

Re: [Freesurfer] freesurfer selxavg3-sess error

2018-04-24 Thread Douglas Greve
Try deleting the contrasts (.mat files) and rerunning On 4/24/18 5:48 AM, Francesca Strappini wrote: Dear FreeSurfer experts, I'm trying to analyze some monkey functional data. I got this error message with selxavg3-sess. I run the following commands: mkcontrast-sess -analysis FF-MonkeyC

[Freesurfer] freesurfer selxavg3-sess error

2018-04-24 Thread Francesca Strappini
External Email - Use Caution Dear FreeSurfer experts, I'm trying to analyze some monkey functional data. I got this error message with selxavg3-sess. I run the following commands: mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast ON-vs-OFF -a 1 -c 0 mkcontrast-sess -an