Re: [Freesurfer] fthresh function in tksurfer

HI Srishti, Please download the latest build from here: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview Best, Ruopeng > On Jul 11, 2018, at 3:49 PM, srishti goel <23srishtig...@gmail.com > > wr

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Thanks so much Ruopeng Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of North Carolina at Chapel Hill email (W): srish...@email.unc.edu skype: srishti.goel12 On Thu, Jul 5, 2018 at 1:40 P

Re: [Freesurfer] fthresh function in tksurfer

After you load the label or overlay you should see it on the left panel. Best, Ruopeng > On Jul 5, 2018, at 12:54 PM, srishti goel <23srishtig...@gmail.com> wrote: > > External Email - Use Caution > > > Hi Rupoeng, > > We downloaded the nightly build for that option but I don

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Hi Rupoeng, We downloaded the nightly build for that option but I don't see it coming on the GUI. I scrolled through every option on the task bar and also the left panel on the GUI but nothing corresponded to 'z-order'. Could you please direct me to wh

Re: [Freesurfer] fthresh function in tksurfer

Yes, I have put an option called z-order in the GUI to control order of rendering for overlays, labels and annoations. To use it you will need to download and install the nightly build from here: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Hi Ruopeng, I just wanted to check and see if there is any update about adding the option of changing surface labels to come below overlays in Freeview. Thanks! Best, Srishti Best, Srishti Social/Clinical Research Specialist Child Imaging Research an

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Thanks a lot Ruopeng, really appreciate it. Best, Srishti Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of North Carolina at Chapel Hill email (W): srish...@email.unc.edu skype: srishti.go

Re: [Freesurfer] fthresh function in tksurfer

It will be added very soon. I'll let you know when it is ready. Best, Ruopeng On 05/28/2018 05:35 PM, srishti goel wrote: Hi Ruopeng, Thank you so much! That option will be super helpful. Are you planning to add that option to Freeview soon? Best, Srishti Best, Srishti Social/Clinical Res

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Hi Ruopeng, Thank you so much! That option will be super helpful. Are you planning to add that option to Freeview soon? Best, Srishti Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of Nort

Re: [Freesurfer] fthresh function in tksurfer

External Email - Use Caution Hello, I did use Freeview but I think using either TkSurfer or Freeview won't matter because what I am trying to figure out is what the fthresh value means for the map. From reading the archive, I understand that, for instance, fthresh value of 0.3 wil

Re: [Freesurfer] fthresh function in tksurfer

I don't know anything about neuroelf, but unless your have a binarized map, then the map is going to change when you change the threshold. BTW, if you wan to use freeview, you can run tksurferfv with the same args as tksurfer On 5/22/18 3:49 PM, srishti goel wrote: Hello, I am trying to v

Re: [Freesurfer] fthresh function in tksurfer

Hi Srishti tksurfer has been deprecated for a pretty long time now. Can you try freeview instead? cheers Bruce On Tue, 22 May 2018, srishti goel wrote: External Email - Use Caution Hello, I am trying to view network based maps produced from a meta-analysis using neuroelf o

[Freesurfer] fthresh function in tksurfer

External Email - Use Caution Hello, I am trying to view network based maps produced from a meta-analysis using neuroelf on the surface in freesurfer. The meta-analytic maps are thresholded maps that represent the proportion of contrasts that activated at each voxel I projected my