you can use anything that you can register the the FS anatomical
On 11/13/2017 04:34 PM, lanbo Wang wrote:
> Can I use data processed by other tool like FSL, or I can only use DTI
> image after Freesurfer processing?
>
> On Fri, Nov 10, 2017 at 3:07 PM, Douglas Greve
> mailto:gr...@nmr.mgh.harv
Can I use data processed by other tool like FSL, or I can only use DTI
image after Freesurfer processing?
On Fri, Nov 10, 2017 at 3:07 PM, Douglas Greve
wrote:
> Yes
>
> On 11/10/17 2:45 PM, lanbo Wang wrote:
>
> Thank you very much, it's work.
> I have another question, this is for structural i
Yes
On 11/10/17 2:45 PM, lanbo Wang wrote:
Thank you very much, it's work.
I have another question, this is for structural imaging. Can I use
those steps for fmri or DTI imaging?
On Fri, Nov 10, 2017 at 1:08 PM, Douglas Greve
mailto:gr...@nmr.mgh.harvard.edu>> wrote:
Don't use --conju
Thank you very much, it's work.
I have another question, this is for structural imaging. Can I use those
steps for fmri or DTI imaging?
On Fri, Nov 10, 2017 at 1:08 PM, Douglas Greve
wrote:
> Don't use --conjunct, just mri_concat file1 file2 ... file N --o output
>
> On 11/10/17 12:56 PM, lanbo
Don't use --conjunct, just mri_concat file1 file2 ... file N --o output
On 11/10/17 12:56 PM, lanbo Wang wrote:
I firstly did mris_preproc separately. Secondly used fscalc to reverse
left symptom subjects. Thirdly used mri_concat --conjunct to combine
all the subjects together.
The code is:
I firstly did mris_preproc separately. Secondly used fscalc to reverse left
symptom subjects. Thirdly used mri_concat --conjunct to combine all the
subjects together.
The code is:
1.mris_preproc --target fsaverage_sym --hemi lh \
--xhemi --paired-diff \
--srcsurfreg fsaverage_sym.sphere.reg \
Do you only have one subject in your input file? You need to run
mris_preproc separately for each subject, create a different file for
each, then mri_concat the files together
On 11/9/17 6:20 PM, lanbo Wang wrote:
Dr. Douglas,
I try #3 method, when I run mri_glmfit, get error.
The code I use
Dr. Douglas,
I try #3 method, when I run mri_glmfit, get error.
The code I used:
[mtobia@localhost lh.lh-rh.thickness]$ mri_glmfit --y
lh.lh-rh.thickness.sm10.mgh --glmdir glm.lh.lh-rh.thickness.sm10 --osgm
--surf fsaverage_sym lh
Reading source surface
/HD4/subjects_results_symptom//fsaverage_sym
which code. I gave 3 options below, which one did you use?
On 11/07/2017 02:43 PM, lanbo Wang wrote:
> I try to use this code to compare left and right hemisphere by paired
> t-test and add age as covariate.
>
> Thanks,
> Lanbo
>
> On Tue, Nov 7, 2017 at 11:40 AM, Douglas N Greve
> mailto:gr..
I try to use this code to compare left and right hemisphere by paired
t-test and add age as covariate.
Thanks,
Lanbo
On Tue, Nov 7, 2017 at 11:40 AM, Douglas N Greve
wrote:
> which method are you trying to implement? If #3, then you need to run
> mris_preproc separately for each subject, and t
which method are you trying to implement? If #3, then you need to run
mris_preproc separately for each subject, and then run that fscalc command
On 11/07/2017 11:33 AM, lanbo Wang wrote:
> Hi Douglas,
>
> Thanks for your reply.
> I created the fsgd file as you show me, and run code like this. Am
Hi Douglas,
Thanks for your reply.
I created the fsgd file as you show me, and run code like this. Am I right?
1.
mris_preproc --fsgd Subject.xhemi.dat \
--target fsaverage_sym --hemi lh \
--xhemi --paired-diff \
--srcsurfreg fsaverage_sym.sphere.reg \
--meas thickness \
--out lh.lh-rh.t
Hi Danny
you need to give us more information if you want us to help you. Please
include the command you ran and the entire screen output.
cheers
Bruce
On Tue, 7 Nov 2017, Danny Deng
wrote:
Dear FDs,
I encountered an odd situation:
My free surfer will always shut down when I run command
I have no idea what that means. can you explain?
On 11/7/17 12:02 AM, Danny Deng wrote:
Dear FDs,
I encountered an odd situation:
My free surfer will always shut down when I run command.
My MacOS version is 10.12.6 (16G29) processor: 1.6 GHz Intel Core i5
I don’t know if the compatibility i
Dear FDs,
I encountered an odd situation:
My free surfer will always shut down when I run command.
My MacOS version is 10.12.6 (16G29) processor: 1.6 GHz Intel Core i5
I don’t know if the compatibility is fine with my download version (MacOS Lion
OS X 10.7 (64b intel)Stable v6.0.0)
Please ki
On 11/06/2017 12:03 PM, lanbo Wang wrote:
> Dear experts,
>
> I have two questions about hemisphere analysis:
>
> 1) When I run left-right hemisphere paired t-test, can I add age as
> covariate? If use fsgd to add covariate, to this paired t-test
> analysis, how to make the fsgd table?
use this
Dear experts,
I have two questions about hemisphere analysis:
1) When I run left-right hemisphere paired t-test, can I add age as
covariate? If use fsgd to add covariate, to this paired t-test analysis,
how to make the fsgd table?
2) I want to reorganize the hemisphere from left-right to symptom-
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