Dear Freesurfer experts,
I tried running the kvlQuantifyHippocampalSubfieldSegmentations.sh script
and get two text files (left right stats) but the only information in the
text files is the subject ID number.
However, on my terminal window, I can see the volume output for each
subfield and for
Hi Jasmeet,
what modification did you exactly make? Whih version of FreeSurfer is this?
Cheers,
/Eugenio
On 07/17/2013 10:22 AM, Jasmeet Hayes wrote:
Dear Freesurfer experts,
I tried running the kvlQuantifyHippocampalSubfieldSegmentations.sh
script and get two text files (left right stats)
Hi Eugenio,
We are using version 5.1. I attached our script. We added to line 60,
setting the subject directory. We also changed the statFileName (see line
291 on the attached script). I should also note that the volumeStats_left
and right text files within each subject's mri folder is empty.
OK, then the question is why kvlQuantifyPosteriorProbabilityImages is
producing an empty file
I think the problem is that
kvlQuantifyHippocampalSubfieldSegmentations.sh behaves in a different
way depending on the number arguments, etc. I would suggest that you go
back to the original
That worked, thanks for your help!
On Wed, Jul 17, 2013 at 12:00 PM, Juan Eugenio Iglesias
igles...@nmr.mgh.harvard.edu wrote:
OK, then the question is why kvlQuantifyPosteriorProbabilityImages is
producing an empty file
I think the problem is that
