Re: [Freesurfer] lh.white surface co-registration

2022-04-04 Thread Douglas N. Greve
On 3/28/2022 2:39 PM, Salar Dini, Elaheh wrote: External Email - Use Caution Thanks Douglas. I have read the freesurfer official page on surface co-registration, but I still can't grasp where the .lta file comes from in case of surface co-registration. I suspect that you can't use

Re: [Freesurfer] lh.white surface co-registration

2022-03-28 Thread Salar Dini, Elaheh
External Email - Use Caution Thanks Douglas. I have read the freesurfer official page on surface co-registration, but I still can't grasp where the .lta file comes from in case of surface co-registration. I suspect that you can't use the same lta file that you used for vol2vol.

Re: [Freesurfer] lh.white surface co-registration

2022-03-17 Thread Douglas N. Greve
If you have an LTA file, you can run mris_apply_reg --lta lh.white your.lta lh.white.newcoords On 3/16/2022 4:15 PM, Salar Dini, Elaheh wrote: External Email - Use Caution Dear Freesurfer experts, Is there a way to move lh.white of a subject to a new coordinate? Something quite

[Freesurfer] lh.white surface co-registration

2022-03-16 Thread Salar Dini, Elaheh
External Email - Use Caution Dear Freesurfer experts, Is there a way to move lh.white of a subject to a new coordinate? Something quite similar as volumetric co-registration but for surfaces. To be exact, I have moved a subject's brainmask.mgz, orig.mgz, aparc+aseg.mgz, and T1