Dear FS users,
can anybody help me in understanding the results of the localGI pipeline?
After calling the
recon-all -s *subj *-localGI
recon-all -s *subj* -qcache -measure pial_lgi
mri_segstats --annot *subj *lh aparc --i $SUBJECTS_DIR/*subj*/surf/lh.pial_lgi
--sum lh.aparc.pial_lgi.stats
Hi Elisa,
It is recommended to use lGI on a vertex-wise basis, i.e. to use qdec the same
way you would for cortical thickness. To get access to pial_lgi as a measure of
interest in qdec, you need to add a row with: MEASURE1 = pial_lgi in the
.Qdecrc file located in your home directory.
