Re: [Freesurfer] mask for cortical thickness

2019-11-20 Thread Greve, Douglas N.,Ph.D.
Pass the mask you want to mri_glmfit with either --label or --mask (depending on your format). You can convert the aparc to labels using mri_annotation2label , then pick the label you want. In this case, you cannot use --cache as that has been computed using whole hemi. You can generate your ow

[Freesurfer] mask for cortical thickness

2019-11-20 Thread Gwang-Won Kim
External Email - Use CautionHi there, I would like to analyze clusterwise correction for multiple comparisons using masks (exsample; superior frontal cortex and middle frontal cortex).I know that "2spaces" means adjust p-values for two hemispheres as follow; mri_glmfit-sim --glmdir