Re: [Freesurfer] matlab crashes on selxavg

2016-06-20 Thread S.V.Shepherd [work]
A follow up, in case anyone else encounters thread-related bugs: It *appears* that this error was resolved by adding the line maxNumCompThreads(4); to *startup.m* stephen *stephen v. shepherd phd* The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA // 212.327.7699 On

Re: [Freesurfer] matlab crashes on selxavg

2016-05-19 Thread Douglas N Greve
sorry, I have no idea On 05/19/2016 11:35 AM, S.V.Shepherd [work] wrote: > It happens when I run more than 3-4 analyses at once. It appears to be > sensitive to other instances of Matlab being open. however, I don't > see clear evidence I'm memory limited. for example, I'm currently > running f

Re: [Freesurfer] matlab crashes on selxavg

2016-05-19 Thread S.V.Shepherd [work]
It happens when I run more than 3-4 analyses at once. It appears to be sensitive to other instances of Matlab being open. however, I don't see clear evidence I'm memory limited. for example, I'm currently running four selxavg in parallel, along with a separate melodic analysis. One more would cause

Re: [Freesurfer] matlab crashes on selxavg

2016-05-19 Thread Douglas N Greve
Does it always die like that? It may be out of memory. On 05/18/2016 01:50 PM, S.V.Shepherd [work] wrote: > Hello, > > When running more than 3 analyses in parallel in FreeSurfer 5.3, I am > getting matlab crashes. Mathworks has politely declined to provide > support unless I can replicate outsi

Re: [Freesurfer] matlab crashes on selxavg

2016-05-19 Thread Bruce Fischl
sounds like you are running out of memory, no? On Wed, 18 May 2016, S.V.Shepherd [work] wrote: Hello, When running more than 3 analyses in parallel in FreeSurfer 5.3, I am getting matlab crashes. Mathworks has politely declined to provide support unless I can replicate outside FsFAST. The er

[Freesurfer] matlab crashes on selxavg

2016-05-18 Thread S.V.Shepherd [work]
Hello, When running more than 3 analyses in parallel in FreeSurfer 5.3, I am getting matlab crashes. Mathworks has politely declined to provide support unless I can replicate outside FsFAST. The errors are variants of """ OMP: Error #34: System unable to allocate necessary resources for OMP thr